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GENESUS: a two-step sequence design program for DNA nanostructure self-assembly.

BioTechniques. 2014; 
Tsutsumi Takanobu,Asakawa Takeshi,Kanegami Akemi,Okada Takao,Tahira Tomoko,Hayashi Ke
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摘要

DNA has been recognized as an ideal material for bottom-up construction of nanometer scale structures by self-assembly. The generation of sequences optimized for unique self-assembly (GENESUS) program reported here is a straightforward method for generating sets of strand sequences optimized for self-assembly of arbitrarily designed DNA nanostructures by a generate-candidates-and-choose-the-best strategy. A scalable procedure to prepare single-stranded DNA having arbitrary sequences is also presented. Strands for the assembly of various structures were designed and successfully constructed, validating both the program and the procedure.

关键词

DNA nanostructures,dynamic programming algorithm,free energy,octahedron,self-assembly,sequence de