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Identification, genomic organization, and expression profiles of single C2H2 zinc finger transcription factors in tomato (Solanum lycopersicum)

J Appl Genet. 2020; 
Xiaoli Liao, Lin Wang, Shunhua Zhu, Fangyan Zheng, Changxian Yang
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DNA Sequencing … genes were amplified through PCR-based approaches using the high-fidelity DNA polymerase Phanta (Vazyme Biotech, China) and sequenced by Tsingke BioTech company (Tsingke … The subcellular localization was predicted with the WoLFPSORT (http://www.genscript.com) … Get A Quote

摘要

C2H2 zinc finger proteins (ZFPs) play essential roles in leaf morphogenesis and floral development, as well as heat stress response and trichome formation, which activate or inhibit gene transcription mainly through interactions with nucleic acids, such as single-strand DNA, RNA binding or RNA/DNA bidirectional binding, and protein interaction. Single C2H2 ZFPs is the subfamily of ZFPs, but little of single C2H2 ZFP family is known in tomato. In this study, we identified 30 single ZFP genes in tomato using bioinformatics-based methods. Gene structures, phylogeny, conserved motifs, cis-element of promoter, chromosomal localization, gene duplication, and expression patterns of these single C2H2 ZFP genes were ana... More

关键词

Expression profiles, Hormone, Single C2H2 ZFP genes, Stress, Tomato