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Exploring Kawasaki disease-specific hub genes revealing a striking similarity of expression profile to bacterial infections using weighted gene co-expression network analysis (WGCNA) and co-expression modules identification tool (CEMiTool): An integrated bioinformatics and experimental study

Immunobiology. 2020; 
Sajjad Esmaeili, Amir Mehrgou, Naser Kakavandi, Yazdan Rahmati
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Molecular Biology Tools … For the expression analysis of the selected genes, primer design was performed using GenScript online tool that is available at https://www.genscript.com/tools/real-time-pcr- tagman-primer-design-tool. Primers are available in Table 2 … Get A Quote

摘要

Kawasaki disease (KD) has been declared a rare idiopathic condition for a long time. The children age less than five years, as the most susceptible group, are at risk of this disease. Since the cause of the disease is unknown, this study was designed to investigate the cause of KD. We applied metaDE and WGCNA packages in order to perform a meta-analysis and identify network modules of co-expressed genes, respectively, on three expression array datasets and also CEMiTool package to confirm detected modules by WGCNA. Using the Pearson correlation coefficient, the resemblance of KD to other symptomatic-similar diseases, including bacterial infections, viral infections, JIA (juvenile idiopathic arthritis), HSP (Hen... More

关键词

Bacteria, CEMiTool, Hub genes, Kawasaki disease, Real-time PCR, WGCNA, metaDE