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A comprehensive enhancer screen identifies TRAM2 as a key and novel mediator of YAP oncogenesis

Genome Biol. 2021-01; 
Li Li, Alejandro P Ugalde, Colinda L G J Scheele, Sebastian M Dieter, Remco Nagel, Jin Ma, Abhijeet Pataskar, Gozde Korkmaz, Ran Elkon, Miao-Ping Chien, Li You, Pin-Rui Su, Onno B Bleijerveld, Maarten Altelaar, Lyubomir Momchev, Zohar Manber, Ruiqi Han, Pieter C van Breugel, Rui Lopes, Peter Ten Dijke, Jacco van Rheenen, Reuven Agami
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Oligo pool … To generate a CRISPR-Cas9 lentiviral library (hereafter referred as CRISPR-YAP-enh- lib), the sgRNAs were cloned into pLentiCRISPRv2 using Gibson Assembly from an oligonucleotide pool synthesized by CustomArray Page 107 … Get A Quote

摘要

background: Frequent activation of the co-transcriptional factor YAP is observed in a large number of solid tumors. Activated YAP associates with enhancer loci via TEAD4-DNA-binding protein and stimulates cancer aggressiveness. Although thousands of YAP/TEAD4 binding-sites are annotated, their functional importance is unknown. Here, we aim at further identification of enhancer elements that are required for YAP functions. results: We first apply genome-wide ChIP profiling of YAP to systematically identify enhancers that are bound by YAP/TEAD4. Next, we implement a genetic approach to uncover functions of YAP/TEAD4-associated enhancers, demonstrate its robustness, and use it to reveal a network of enhancers requ... More

关键词

Enhancer, Gene regulation, Invasion, Migration, Proliferation, TRAM2, YAP