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Capturing sequence diversity in metagenomes with comprehensive and scalable probe design
Authors: Metsky HC, Siddle KJ, Gladden-Young A, Qu J, Yang DK, Brehio P, Goldfarb A, Piantadosi A, Wohl S, Carter A, Lin AE, Barnes KG, Tully DC, Corleis B, Hennigan S, Barbosa-Lima G, Vieira YR, Paul LM, Tan AL, Garcia KF, Parham LA, Odia I, Eromon P, Folarin OA, Goba A, Viral Hemorrhagic Fever Consortium., Simon-Lorière E, Hensley L, Balmaseda A, Harris E, Kwon DS, Allen TM, Runstadler JA, Smole S, Bozza FA, Souza TML, Isern S, Michael SF, Lorenzana I, Gehrke L, Bosch I, Ebel G, Grant DS, Happi CT, Park DJ, Gnirke A, Sabeti PC, Matranga CB
Journal: Nature Biotechnology
PubMed ID: 30718881
Doi: 10.1038/s41587-018-0006-x
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Shambhala: a platform-agnostic data harmonizer for gene expression data
Authors: Nicolas Borisov, Irina Shabalina, Victor Tkachev, Maxim Sorokin, Andrew Garazha, Andrey Pulin, Ilya I Eremin, Anton Buzdin
Journal: BMC bioinformatics
PubMed ID: 30727942
Doi: 10.1186/s12859-019-2641-8
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Application of CRISPR genetic screens to investigate neurological diseases.
Authors: So RWL,, Chung SW, Lau HHC,, Watts JJ, Gaudette E, Al-Azzawi ZAM, Bishay J, Lin LT,, Joung J,, Wang X,, Schmitt-Ulms G,.
Journal: Mol Neurodegener
PubMed ID: 31727120
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Experimental and Computational Approaches for Single-Cell Enhancer Perturbation Assay
Authors: Xie S, Hon GC
Journal: Methods in molecular biology (Clifton, N.J.)
PubMed ID: 30758829
Doi: 10.1007/978-1-4939-9057-3_14
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Activity-by-Contact model of enhancer specificity from thousands of CRISPR perturbations
Authors: Charles P Fulco, Joseph Nasser, Thouis R Jones, Glen Munson, Drew T Bergman, Vidya Subramanian, Sharon R Grossman, Rockwell Anyoha, Tejal A Patwardhan, Tung H Nguyen, Michael Kane, Benjamin Doughty, Elizabeth M Perez, Neva C Durand, Elena K Stamenova, Erez Lieberman Aiden, Eric S Lander, Jesse M Engreitz
Journal: biorxiv
Doi: 10.1101/529990
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Activity-by-contact model of enhancer-promoter regulation from thousands of CRISPR perturbations
Authors: Fulco CP1,2, Nasser J1, Jones TR1, Munson G1, Bergman DT1, Subramanian V1, Grossman SR1,3, Anyoha R1, Doughty BR1, Patwardhan TA1, Nguyen TH1, Kane M1, Perez EM1, Durand NC1,4,5,6, Lareau CA1, Stamenova EK1, Aiden EL1,4,5,6,7, Lander ES8,9,10, Engreitz JM11,12.
Journal: Nat Genet.
PubMed ID: 31784727
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Optical Pooled Screens in Human Cells
Authors: Feldman D, Singh A, Schmid-Burgk JL, Carlson RJ, Mezger A, Garrity AJ, Zhang F, Blainey PC
Journal: Cell
PubMed ID: 31626775
Doi: 10.1016/j.cell.2019.09.016
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CRISPR Screening in Single Cells
Authors: Henriksson J
Journal: Methods in molecular biology (Clifton, N.J.)
PubMed ID: 31028650
Doi: 10.1007/978-1-4939-9240-9_23
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Exploration of CTCF post-translation modifications uncovers Serine-224 phosphorylation by PLK1 at pericentric regions during the G2/M transition
Authors: Del Rosario BC, Kriz AJ, Del Rosario AM, Anselmo A, Fry CJ, White FM, Sadreyev RI, Lee JT
Journal: Elife
PubMed ID: 30676316
Doi: 10.7554/eLife.42341
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CRISPR/Cas9-Based Gene Dropout Screens
Authors: Wu K, Malek SN
Journal: Methods in molecular biology (Clifton, N.J.)
PubMed ID: 30350207
Doi: 10.1007/978-1-4939-8876-1_15
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