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Genome-Wide Characterization of Major Intrinsic Proteins in Four Grass Plants and Their Non-Aqua Transport Selectivity Profiles with Comparative Perspective.

PLoS One.. 2016-06; 
Azad AK,Ahmed J,Alum MA,Hasan MM,Ishikawa T,Sawa Y,Katsuhara M.
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Molecular Biology Tools ... The subcellular localizations of PvMIPs, SiMIPs, SbMIPs and BdMIPs were predicted in silico by using tools of WoLF PSORT (http://www.genscript.com/wolf-psort.html), TargetP (www.cbs.dtu.dk/Services/TargetP), Cello prediction system (http://cello.life.nctu.edu.tw/) and ... Get A Quote

摘要

Major intrinsic proteins (MIPs), commonly known as aquaporins, transport not only water in plants but also other substrates of physiological significance and heavy metals. In most of the higher plants, MIPs are divided into five subfamilies (PIPs, TIPs, NIPs, SIPs and XIPs). Herein, we identified 68, 42, 38 and 28 full-length MIPs, respectively in the genomes of four monocot grass plants, specifically Panicum virgatum, Setaria italica, Sorghum bicolor and Brachypodium distachyon. Phylogenetic analysis showed that the grass plants had only four MIP subfamilies including PIPs, TIPs, NIPs and SIPs without XIPs. Based on structural analysis of the homology models and comparing the primary selectivity-related motifs... More

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