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Genome analysis of cotton leafroll dwarf virus reveals variability in the silencing suppressor protein, genotypes and genomic recombinants in the USA

PLoS ONE. 2021-07; 
Afsha Tabassum, Sudeep Bag, Nelson D Suassuna, Kassie N Conner, Peng Chee, Robert C Kemerait, Phillip Roberts
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PCR Cloning and Subcloning … The PCR products of the expected size were gel purified, cloned into pGEM-T easy I cloning vector (Promega, USA), and sequenced using Sanger sequencing (GenScript, USA). Three clones from each amplicon were sequenced, and a consensus sequence was obtained. A … Get A Quote

摘要

Cotton leafroll dwarf virus (CLRDV) is an emerging virus in cotton production in Georgia and several other Southeastern states in the USA. To better understand the genetic diversity of the virus population, the near complete genome sequences of six isolates from Georgia and one from Alabama were determined. The isolates sequenced were 5,866 nucleotides with seven open reading frames (ORFs). The isolates from Georgia were >94% identical with other isolates from the USA and South America. In the silencing suppressor protein (P0), at amino acid position 72, the isolates from Georgia and Alabama had a valine (V), similar to resistant-breaking 'atypical' genotypes in South America, while the Texas isolate had isoleu... More

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